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Title 

Complete sequence and organization of the cucumber (Cucumis sativus L. cv. Baekmibaekdadagi) chloroplast genome

Authors 

J S KimJ D JungJ A LeeH W ParkK H OhWon Joong ChungD W ChoiJang Ryol LiuK Y Cho

Publisher 

Springer Verlag (Germany)

Issue Date 

2006

Citation 

Plant Cell Reports, vol. 25, no. 4, pp. 334-340

Keywords 

chloroplast genome sequencecucumber (Cucumis sativus)fosmid libraryshotgun librarynucleic acid sequenceschloroplastcytologygene expression regulationgene librarygenome

Abstract 

The nucleotide sequence of the cucumber (Cucumis sativus L. cv. Baekmibaekdadagi) chloroplast genome was completed (DQ119058). The circular double-stranded DNA, consisting of 155,527 bp, contained a pair of inverted repeat regions (IRa and IRb) of 25,187 bp each, which were separated by small and large single copy regions of 86,879 and 18,274 bp, respectively. The presence and relative positions of 113 genes (76 peptide-encoding genes, 30 tRNA genes, four rRNA genes, and three conserved open reading frames) were identified. The major portion (55.76%) of the C. sativus chloroplast genome consisted of gene-coding regions (49.13% protein coding and 6.63% RNA regions; 27.81% LSC, 9.46% SSC and 18.49% IR regions), while intergenic spacers (including 20 introns) made up 44.24%. The overall G-C content of C. sativus chloroplast genome was 36.95%. Sixteen genes contained one intron, while two genes had two introns. The expansion/contraction manner of IR at IRb/LSC and IR/SSC border in Cucumis was similar to that of Lotus and Arabidopsis, and the manner at IRa/LSC was similar to Lotus and Nicotiana. In total, 56 simple sequence repeats (more than 10 bases) were identified in the C. sativus chloroplast genome.

ISSN 

0721-7714

Link 

http://dx.doi.org/10.1007/s00299-005-0097-y

Appears in Collections

1. Journal Articles > Journal Articles

Registered Date

2017-04-19


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