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Title 

Pedobacter terrae sp. nov., isolated from soil

Authors 

Jung-Hoon YoonSo Jung KangTae Kwang Oh

Publisher 

Society for General Microbiology

Issue Date 

2007

Citation 

International Journal of Systematic and Evolutionary Microbiology, vol. 57, no. 11, pp. 2462-2466

Keywords 

new speciespedobacter roseuspedobacter sandarakinuspedobacter suwonensispedobacter terraesoilsphingobacteriaceaesoil microbiologypedobacter

Abstract 

A Gram-negative, non-motile, rod-shaped bacterial strain, DS-57T, was isolated from soil from Dokdo, Korea, and its taxonomic position was investigated using a polyphasic approach. It grew optimally at 25 °C and in trypticase soy broth without NaCl and trypticase soy broth with 0.5% NaCl. Strain DS-57T contained MK-7 as the predominant menaquinone and iSo-C15:0, C16:17c and/or iSo-C15:0 2-OH and iSo-C17:0 3-OH as the major fatty acids. The DNA G+C content was 39.7 mol%. Phylogenetic analyses based on 16S rRNA gene sequences revealed that strain DS-57T was most closely related to the genus Pedobacter of the family Sphingobacteriaceae, clustering coherently with Pedobacter suwonensis, Pedobacter roseus and Pedobacter sandarakinus. Strain DS-57T exhibited 16S rRNA gene sequence similarity values of 99.2, 97.9 and 97.2 % with respect to the type strains of P. suwonensis, P. roseus and P. sandarakinus, respectively, and values less than 95.6 % with respect to the type strains of other Pedobacter species. Strain DS-57T exhibited levels of DNA-DNA relatedness of 45, 17 and 15 % with respect to the type strains of P. suwonensis, P. roseus and P. sandarakinus, respectively. Differential phenotypic properties, together with the phylogenetic distinctiveness and the DNA-DNA relatedness data, were sufficient to allow the classification of strain DS-57T as a species that is separate from recognized Pedobacter species. On the basis of phenotypic properties and phylogenetic distinctiveness, therefore, strain DS-57T represents a novel species of the genus Pedobacter, for which the name Pedobacter terrae sp. nov. is proposed. The type strain is DS-57T (=KCTC 12762T = DSM 1 7933T).

ISSN 

1466-5026

Link 

http://dx.doi.org/10.1099/ijs.0.64727-0

Appears in Collections

1. Journal Articles > Journal Articles

Registered Date

2017-04-19


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