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Title 

CONSORF: a consensus prediction system for prokaryotic coding sequences

Authors 

Sung Soo KangSung-Jin YangS KimJong Bhak

Publisher 

Oxford University Press (OUP)

Issue Date 

2007

Citation 

Bioinformatics, vol. 23, no. 22, pp. 3088-3090

Keywords 

automationbioinformaticsconsensus sequencegene sequencegenome analysispredictionpriority journalprokaryotereliabilitysensitivity and specificity

Abstract 

Summary: CONSORF is a fully automatic high-accuracy identification system that provides consensus prokaryotic CDS information. It first predicts the CDSs supported by consensus alignments. The alignments are derived from multiple genome-to-proteome comparisons with other prokaryotes using the FASTX program. Then, it fills the empty genomic regions with the CDSs supported by consensus ab initio predictions. From those consensus results, CONSORF provides prediction reliability scores, predicted frame-shifts, alternative start sites and best pair-wise match information against other prokaryotes.

ISSN 

1367-4803

Link 

http://dx.doi.org/10.1093/bioinformatics/btm512

Appears in Collections

1. Journal Articles > Journal Articles

Registered Date

2017-04-19


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