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Title 

GS2PATH: A web-based integrated analysis tool for finding functional relationships using gene ontology and biochemical pathway data

Authors 

Jin Ok YangC ParkByungUk LeeS KimJong BhakH G Woo

Publisher 

Biomedical Informatics Publishing Group

Issue Date 

2007

Citation 

Bioinformation, vol. 2, no. 5, pp. 194-196

Keywords 

gene set enrichment testgene ontologypathwaysintegrated search

Abstract 

GS2PATH is a Web-based pipeline tool to permit functional enrichment of a given gene set from prior knowledge databases, including gene ontology (GO) database and biological pathway databases. The tool also provides an estimation of gene set enrichment, in GO terms, from the databases of the KEGG and BioCarta pathways, which may allow users to compute and compare functional over-representations. This is especially useful in the perspective of biological pathways such as metabolic, signal transduction, genetic information processing, environmental information processing, cellular process, disease, and drug development. It provides relevant images of biochemical pathways with highlighting of the gene set by customized colors, which can directly assist in the visualization of functional alteration. AVAILABILITY: The GS2PATH system is freely available at http://array.kobic.re.kr:8080/arrayport/gs2path/.

ISSN 

0973-2063

Appears in Collections

1. Journal Articles > Journal Articles

Registered Date

2019-05-02


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