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Title 

MassNet: a functional annotation service for protein mass spectrometry data

Authors 

Dae Ui ParkByung Chul KimSung Woong ChoSung Jin ParkJ S ChoiS I KimJong BhakSung Hoon Lee

Publisher 

Oxford University Press

Issue Date 

2008

Citation 

Nucleic Acids Research, vol. 36, no. Sup 2, pp. W491-W495

Keywords 

proteincomputer interfacecomputer programmass spectrometrymetabolismprotein analysisprotein databasedatabases, proteinprotein interaction mapping

Abstract 

Although mass spectrometry has been frequently used to identify proteins, there are no web servers that provide comprehensive functional annotation of those identified proteins. It is necessary to provide such web service due to a rapid increase in the data. We, therefore, introduce MassNet, which provides (i) physico-chemical analysis information, (ii) KEGG pathway assignment (iii) Gene Ontology mapping and (iv) protein-protein interaction (PPI) prediction for the data from MASCOT, Prospector and Profound. MassNet provides the prediction information for PPIs using both 3D structural interaction and experimental interaction deposited in PSIMAP, BIND, DIP, HPRD, IntAct, MINT, CYGD and BioGrid.

ISSN 

0305-1048

Link 

http://dx.doi.org/10.1093/nar/gkn241

Appears in Collections

1. Journal Articles > Journal Articles

Registered Date

2019-05-02


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