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Title 

A simple and fast web alignment tool for large amount of sequence data

Authors 

Young Seok LeeJung Soo Oh

Publisher 

Korea Genome Organization

Issue Date 

2008

Citation 

Genomics & Informatics, vol. 6, no. 3, pp. 157-159

Keywords 

alignmentclustalW-MPIlarge dataJalviewparallel process

Abstract 

Multiple sequence alignment (MSA) is the most important step for many of biological sequence analyses, homology search, and protein structural assignments. However, large amount of data make biologists difficult to perform MSA analyses and it requires much computational time to align many sequences. Here, we have developed a simple and fast web alignment tool for aligning, editing, and visualizing large amount of sequence data. We used a cluster server installed ClustalW-MPI using web services and message passing interface (MPI). It also enables users to edit multiple sequence alignments for manual editing and to download the input data and results such as alignments and phylogenetic tree.

ISSN 

1598-866X

Link 

http://dx.doi.org/10.5808/GI.2008.6.3.157

Appears in Collections

1. Journal Articles > Journal Articles

Registered Date

2017-04-19


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