상세 정보

underline
Metadata Downloads : dc(xml) or Excel
Cited 0 time in scopus ci

Title 

Functional domain marker (FDM): an in silico demonstration in solanaceae using simple sequence repeats (SSRs)

Authors 

Hyojung PaikChoi Jae PilJun-kyoung ChoeCheol-Goo Hur

Publisher 

Springer Verlag (Germany)

Issue Date 

2010

Citation 

Plant Molecular Biology Reporter, vol. 28, no. 2, pp. 352-356

Keywords 

Bioinformatic toolBiological databaseFunctional marker developmentGene annotationSequence analysis

Abstract 

A simple sequence repeat-functional domain marker (SSR-FDM) relies on development of molecular markers for putative functional domains using simple sequence repeats and in silico annotated information of those sequences using biological databases. A total of 148,921 tomato ESTs and 115,598 pepper ESTs were analyzed, resulting in the identification of 439 tomato SSR-FDMs and 489 pepper SSR-FDMs. Among them, 54 pepper SSR-FDMs were tested on pepper. Several genomic databases were used for the in silico annotation of the SSR-FDM sequences that revealed a wide range of candidate genes. This study demonstrates that SSR-FDMs provide information regarding transcribed genetic markers and putative function as a genomic resource database for Solanaceae. This system could be applied to the development of a functional marker database for any crop species.

ISSN 

0735-9640

Link 

http://dx.doi.org/10.1007/s11105-009-0154-8

Appears in Collections

1. Journal Articles > Journal Articles

Registered Date

2019-05-02


There are no files associated with this item.
qrcode

FusionCharts.
DSpace Software Coptright(c) 2010 MIT and Hewleft-Packard  /  KRIBB-REPOSITORY ( Email:jakim@kribb.re.kr)